APIΒΆ Here is Biom3d python API for most importants modules. API Auto-configuration auto_config() compute_median() data_fingerprint() display_info() find_patch_pool_batch() get_aug_patch() parameters_return() Builder Callbacks Callback Callbacks DatasetSizeScheduler ForceFGScheduler GlobalScaleScheduler ImageSaver LRSchedulerCosine LRSchedulerMultiStep LRSchedulerPoly LogPrinter LogSaver MetricsUpdater ModelSaver MomentumScheduler OverlapScheduler TensorboardSaver WeightDecayScheduler Datasets Semseg batchgen Semseg patch fast Torchio Evaluation eval() robust_sort() Metrics CrossEntropy DC_and_CE_loss DeepMetric Dice DiceBCE IoU MSE Metric RobustCrossEntropyLoss SoftDiceLoss get_tp_fp_fn_tn() sum_tensor() Models VGG3D Decoder EfficentNet3D Encoder VGG3D Encoder EffUNet VGG3dDeep OMERO OMERO Downloader OMERO Uploader OMERO Prediction OMERO Preprocess, Train & Pred Predictions pred() pred_multiple() pred_seg() pred_seg_eval() pred_seg_eval_single() pred_single() Predictors LoadImgPatch load_img_seg() seg_postprocessing() seg_predict() seg_predict_old() seg_predict_patch() seg_predict_patch_2() Preprocessing Preprocessing auto_config_preprocess() correct_mask() generate_kfold_csv() get_resample_shape() hold_out() resize_img_msk() sanity_check() seg_preprocessor() standardize_img_dims() strat_kfold() Preprocess & train preprocess_train() Register Dataloader and batchgenerator Models Metrics Trainers Preprocessor Predictors Postprocessor Train main_pretrain_seg_pred_eval() main_seg_pred_eval() train() Trainers seg_patch_train() seg_patch_validate() seg_train() seg_validate() Utils DataHandler Config Sampling & Data augmentation Image visualisation & resizing Filtering & thresholding Encoding Testing Decorator Folds Neural network Files & directories Time