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Biom3d
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Biom3d

Installation

  • Installation

Tutorials

  • The Graphical User Interface
  • The Command Line Interface
  • How to use Biom3d in Docker
  • The Configuration file and the Register
  • Server and client
  • Creating a Dataset

How it works ?

  • Pre processing
  • Post processing

FAQ

  • Frequently asked questions

Developper

  • API
    • Auto-configuration
    • Builder
    • Callbacks
    • Datasets
      • Semseg batchgen
      • Semseg patch fast
      • Torchio
    • Evaluation
    • Metrics
    • Models
      • VGG3D Decoder
      • EfficentNet3D Encoder
      • VGG3D Encoder
      • EffUNet
      • VGG3dDeep
    • OMERO
    • Predictions
    • Predictors
    • Preprocessing
    • Preprocess & train
    • Register
    • Train
    • Trainers
    • Utils
      • DataHandler
      • Config
      • Sampling & Data augmentation
      • Image visualisation & resizing
      • Filtering & thresholding
      • Encoding
      • Testing
      • Decorator
      • Folds
      • Neural network
      • Files & directories
      • Time
  • Deployment
    • Docker deployment
    • Installer
    • Continuous Integration / Deployment
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DeploymentΒΆ

Here are describe the logic behind deployment and its implementation.

Deployment

  • Docker deployment
    • Build arguments
    • Installing dependencies
    • Entrypoint
    • Other specificities
  • Installer
    • Windows
    • MacOS
    • Logic
    • Auto updating
    • Other
  • Continuous Integration / Deployment
    • How to trigger it
    • Working
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Docker deployment
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